hmdb-database
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
Target: Databases. Automatically collected · unverified.
Excerpt from the author’s documentation
Extracted from a fixed version of SKILL.md in its original language. This is the author’s documentation; installation, compatibility and runtime results have not been verified by this site.
Read the original English text
Topics in the source
- HMDB Database
- Overview
- When to Use This Skill
- Database Contents
- Core Capabilities
- 1. Web-Based Metabolite Searches
- 2. Accessing Metabolite Information
- 3. Downloadable Datasets
The Human Metabolome Database (HMDB) is a comprehensive, freely available resource containing detailed information about small molecule metabolites found in the human body. This skill should be used when performing metabolomics research, clinical chemistry, biomarker discovery, or metabolite identification tasks. HMDB version 5.0 (current as of 2025) contains: 220,945 metabolite entries covering both water-soluble and lipid-soluble compounds 8,610 protein sequences for enzymes and transporters involved in metabolism 130+ data fields per metabolite including: Chemical properties (structure, formula, molecular weight, InChI, SMILES) Clinical data (biomarker associations, diseases, normal/abnormal concentrations) Biological information (pathways, reactions, locations) Spectroscopic data (NMR, MS, MS-MS spectra) External database links (KEGG, PubChem, MetaCyc, ChEBI, PDB, UniProt, GenBank) Access HMDB through the web interface at https://www.hmdb.ca/ for: Text Searches: Search by metabolite name, synonym, or identifier (HMDB ID) Example HMDB IDs: HMDB0000001, HMDB0001234 Search by disease associations or pathway involvement Query by biological specimen type (urine, serum, CSF, saliva,
This is an excerpt. Refer to the complete source and its current requirements.
- Source repository
- davila7/claude-code-templates
- Source file
- cli-tool/components/skills/scientific/hmdb-database/SKILL.md
- Fixed revision
- 21be197f100a12b8d0dd9a211cc244c8179f84d3
Sources and evidence
This record was collected automatically. Its documentation, suitability and runtime behavior have not been manually verified.
Author: davila7/claude-code-templates · original repository metadata. Documentation review: Not reviewed. Last source check: 2026-11-09T15:01:40.112Z.
Categories are inferred from names, descriptions and paths. They do not establish compatibility.
License and attribution
MIT. Third-party content and copyright remain with their authors. Refer to the original license and terms.
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Limitations and notes
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