neuropixels-analysis
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation.
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Excerpt from the author’s documentation
Extracted from a fixed version of SKILL.md in its original language. This is the author’s documentation; installation, compatibility and runtime results have not been verified by this site.
Read the original English text
Topics in the source
- Neuropixels Data Analysis
- Overview
- When to Use This Skill
- Supported Hardware & Formats
- Quick Start
- Basic Import and Setup
- Loading Data
- Complete Pipeline (One Command)
Comprehensive toolkit for analyzing Neuropixels high-density neural recordings using current best practices from SpikeInterface, Allen Institute, and International Brain Laboratory (IBL). Supports the full workflow from raw data to publication-ready curated units. This skill should be used when: Working with Neuropixels recordings (.ap.bin, .lf.bin, .meta files) Loading data from SpikeGLX, Open Ephys, or NWB formats Preprocessing neural recordings (filtering, CAR, bad channel detection) Detecting and correcting motion/drift in recordings Running spike sorting (Kilosort4, SpykingCircus2, Mountainsort5) Computing quality metrics (SNR, ISI violations, presence ratio) Curating units using Allen/IBL criteria Creating visualizations of neural data Exporting results to Phy or NWB | Probe | Electrodes | Channels | Notes | |-------|-----------|----------|-------| | Neuropixels 1.0 | 960 | 384 | Requires phaseshift correction | | Neuropixels 2.0 (single) | 1280 | 384 | Denser geometry | | Neuropixels 2.0 (4-shank) | 5120 | 384 | Multi-region recording | | Format | Extension | Reader | |--------|-----------|--------| | SpikeGLX | .ap.bin, .lf.bin, .meta | si.readspikeglx() | | Open Ephys | .c
This is an excerpt. Refer to the complete source and its current requirements.
- Source repository
- davila7/claude-code-templates
- Source file
- cli-tool/components/skills/scientific/neuropixels-analysis/SKILL.md
- Fixed revision
- 21be197f100a12b8d0dd9a211cc244c8179f84d3
Requirements
- Only the author’s Skill metadata is included. Read the full instructions to check dependencies, licensing and conditions of use.
A small first task
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Instructions for your AI tool
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Author: davila7/claude-code-templates · original repository metadata. Documentation review: Not reviewed. Last source check: 2026-11-09T15:01:40.186Z.
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