latchbio-integration
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
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Excerpt from the author’s documentation
Extracted from a fixed version of SKILL.md in its original language. This is the author’s documentation; installation, compatibility and runtime results have not been verified by this site.
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Topics in the source
- LatchBio Integration
- Overview
- Core Capabilities
- 1. Workflow Creation and Deployment
- 2. Data Management
- 3. Resource Configuration
- 4. Verified Workflows
- Quick Start
Latch is a Python framework for building and deploying bioinformatics workflows as serverless pipelines. Built on Flyte, create workflows with @workflow/@task decorators, manage cloud data with LatchFile/LatchDir, configure resources, and integrate Nextflow/Snakemake pipelines. The Latch platform provides four main areas of functionality: Define serverless workflows using Python decorators Support for native Python, Nextflow, and Snakemake pipelines Automatic containerization with Docker Auto-generated no-code user interfaces Version control and reproducibility Cloud storage abstractions (LatchFile, LatchDir) Structured data organization with Registry (Projects → Tables → Records) Type-safe data operations with links and enums Automatic file transfer between local and cloud Glob pattern matching for file selection Pre-configured task decorators (@smalltask, @largetask, @smallgputask, @largegputask) Custom resource specifications (CPU, memory, GPU, storage) GPU support (K80, V100, A100) Timeout and storage configuration Cost optimization strategies Production-ready pre-built pipelines Bulk RNA-seq, DESeq2, pathway analysis AlphaFold and ColabFold for protein structure prediction Sin
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- Source repository
- davila7/claude-code-templates
- Source file
- cli-tool/components/skills/scientific/latchbio-integration/SKILL.md
- Fixed revision
- 21be197f100a12b8d0dd9a211cc244c8179f84d3
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Author: davila7/claude-code-templates · original repository metadata. Documentation review: Not reviewed. Last source check: 2026-11-09T15:01:40.137Z.
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