SKILL

scientific-db-pubmed-database

Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and API-backed literature monitoring. Use when a task needs biomedical literature from PubMed rather than general web search.

Target: Databases. Automatically collected · unverified.

Excerpt from the author’s documentation

Extracted from a fixed version of SKILL.md in its original language. This is the author’s documentation; installation, compatibility and runtime results have not been verified by this site.

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Topics in the source

  • PubMed Database
  • When to Use
  • Query Construction
  • MeSH and Subheadings
  • Filters
  • E-utilities Workflow
  • Output Discipline
  • Review Checklist

Use this skill when a task needs biomedical literature from PubMed rather than general web search. Searching MEDLINE or life-sciences literature. Building PubMed queries with MeSH terms, field tags, dates, or article types. Looking up PMIDs, abstracts, publication metadata, or related citations. Running systematic-review search passes that need repeatable search strings. Using NCBI E-utilities directly from Python, shell, or another HTTP client. Start with the research question, split it into concepts, then combine concepts with Boolean operators. Useful PubMed field tags: [ti]: title [ab]: abstract [tiab]: title or abstract [au]: author [ta]: journal title abbreviation [mh]: MeSH term [majr]: major MeSH topic [pt]: publication type [dp]: date of publication [la]: language Examples: Prefer MeSH when the concept has a stable controlled-vocabulary term. Combine MeSH with title/abstract terms when the topic is new or terminology varies. Correct subheading syntax puts the subheading before the field tag: Use [majr] only when the topic must be central to the paper. It can improve precision but may miss relevant work. Publication types: clinical trial[pt] meta-analysis[pt] randomized con

This is an excerpt. Refer to the complete source and its current requirements.

Source repository
affaan-m/ECC
Source file
skills/scientific-db-pubmed-database/SKILL.md
Fixed revision
d2ef2680594f9a17526a6e1a2e18b3d242c5d17b
Read the complete original documentation ↗

Sources and evidence

This record was collected automatically. Its documentation, suitability and runtime behavior have not been manually verified.

Author: affaan-m/ECC · original repository metadata. Documentation review: Not reviewed. Last source check: 2026-11-09T16:01:00.494Z.

Categories are inferred from names, descriptions and paths. They do not establish compatibility.

License and attribution

MIT. Third-party content and copyright remain with their authors. Refer to the original license and terms.

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Limitations and notes

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