biomni

Topics in the source

• Biomni
• Overview
• Core Capabilities
• When to Use This Skill
• Quick Start
• Installation and Setup
• Basic Usage Pattern
• Working with Biomni

Biomni is an open-source biomedical AI agent framework from Stanford's SNAP lab that autonomously executes complex research tasks across biomedical domains. Use this skill when working on multi-step biological reasoning tasks, analyzing biomedical data, or conducting research spanning genomics, drug discovery, molecular biology, and clinical analysis. Biomni excels at: 1. Multi-step biological reasoning - Autonomous task decomposition and planning for complex biomedical queries 2. Code generation and execution - Dynamic analysis pipeline creation for data processing 3. Knowledge retrieval - Access to 11GB of integrated biomedical databases and literature 4. Cross-domain problem solving - Unified interface for genomics, proteomics, drug discovery, and clinical tasks Use biomni for: CRISPR screening - Design screens, prioritize genes, analyze knockout effects Single-cell RNA-seq - Cell type annotation, differential expression, trajectory analysis Drug discovery - ADMET prediction, target identification, compound optimization GWAS analysis - Variant interpretation, causal gene identification, pathway enrichment Clinical genomics - Rare disease diagnosis, variant pathogenicity, phenoty

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