SKILL

umap-learn

UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.

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Excerpt from the author’s documentation

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Topics in the source

  • UMAP-Learn
  • Overview
  • Quick Start
  • Installation
  • Basic Usage
  • Typical Workflow
  • Parameter Tuning Guide
  • nneighbors (default: 15)

UMAP (Uniform Manifold Approximation and Projection) is a dimensionality reduction technique for visualization and general non-linear dimensionality reduction. Apply this skill for fast, scalable embeddings that preserve local and global structure, supervised learning, and clustering preprocessing. UMAP follows scikit-learn conventions and can be used as a drop-in replacement for t-SNE or PCA. Critical preprocessing requirement: Always standardize features to comparable scales before applying UMAP to ensure equal weighting across dimensions. UMAP has four primary parameters that control the embedding behavior. Understanding these is crucial for effective usage. Purpose: Balances local versus global structure in the embedding. How it works: Controls the size of the local neighborhood UMAP examines when learning manifold structure. Effects by value: Low values (2-5): Emphasizes fine local detail but may fragment data into disconnected components Medium values (15-20): Balanced view of both local structure and global relationships (recommended starting point) High values (50-200): Prioritizes broad topological structure at the expense of fine-grained details Recommendation: Start with

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Source repository
davila7/claude-code-templates
Source file
cli-tool/components/skills/scientific/umap-learn/SKILL.md
Fixed revision
21be197f100a12b8d0dd9a211cc244c8179f84d3
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This record was collected automatically. Its documentation, suitability and runtime behavior have not been manually verified.

Author: davila7/claude-code-templates · original repository metadata. Documentation review: Not reviewed. Last source check: 2026-11-09T15:01:40.436Z.

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